GPU加速的生物分子模拟
2024.07.08
投稿：龚惠英部门：理学院浏览次数：
活动信息
报告题目 (Title)：GPU-Accelerated Biomolecular Simulations（GPU加速的生物分子模拟）
报告人 (Speaker)：Prof. Huan-Xiang Zhou, University of Illinois Chicago, USA（周焕祥教授，美国伊利诺伊大学芝加哥分校）
报告时间 (Time)：2024年7月11日(周四) 9:30
报告地点 (Place)：校本部 E106
邀请人 (Inviter)：郭聪 副教授
主办部门：理学院物理系
摘要 (Abstract)：
Intrinsically disordered proteins (IDPs) account for a significant fraction of any proteome and are central to numerous cellular functions. Yet how sequences of IDPs code for their conformational ensembles, conformational dynamics, and ultimately, functions is poorly understood. I will report our advances from GPU-accelerated molecular dynamics simulations. Three topics will be covered. (I) IDPs in solution. Results include force field selection [1], AI-based conformational mining [2], and characterization and prediction of sequence-dependent backbone dynamics [3, 4]. (II) IDP-membrane association. Results include characterization of fuzzy membrane association [5] and prediction of residue-specific membrane association propensities [6]. (III) Liquid-liquid phase separation. Results include calculations of thermodynamic and dynamic properties of biomolecular condensates [7, 8].
1. A. Hicks, C. A. Escobar, T. A. Cross, and H.-X. Zhou (2020). Biomolecules 10, 946
2. A. Gupta, S. Dey, A. Hicks, and H.-X. Zhou (2022). Commun. Biol. 5, 610
3. S. Dey, M. MacAinsh, and H.-X. Zhou (2022). J. Chem. Theory Comput. 18, 6310-6323
4. S. Qin and H.-X. Zhou (2023). eLife 12, RP88953
5. A. Hicks, C. A. Escobar, T. A. Cross, and H.-X. Zhou (2021). JACS Au 1, 66-78
6. S. Qin, A. Hicks, S. Dey, R. Prasad, H.-X. Zhou (2022). Membranes 12, 773
7. K. Mazarakos, R. Prasad, and H.-X. Zhou (2022). Front. Mol. Biosci. 9, 1021939
8. D. Kota, R. Prasad, and H.-X. Zhou (2024). J. Am. Chem. Soc. 146, 1326-1336
